coli, and the survival of the ΔarcA/ΔfliC double mutant E. coli was close to that of the wild type E. coli (Figure 6). This indicates that elimination of flagellin in the ΔarcA mutant E. coli enhanced its survival under H2O2 stress. Figure 6 Deletion of fliC increased the resistance of the ΔarcA mutant E. coli to H 2 O 2 . Growth and survival of wild type E. coli (diamond), ΔarcA mutant E. coli (square), ΔfliC mutant E. coli (triangle) and ΔarcA/ΔfliC double mutant E. coli (cross) in LB medium containing 1.5 mM H2O2 (a) or LB broth alone (b). The survival of bacteria was determined by plating and plotted against selleck the indicated incubation time period. At least three experiments

were performed, and results from a representative experiment performed in triplicates are shown. DNA-PK inhibitor Error bars indicate standard deviation and sometimes fall within the data label. In addition to flagellin, we have also attempted to delete other abundant proteins to determine if such deletions would improve the survival of the arcA mutant E. coli. Our efforts were not successful, however, because most abundant proteins such as elongation factors, 30 s ribosomal proteins, and chaperone proteins are either essential or important for E. coli, and such deletions would be detrimental to E. coli. We successfully deleted D-ribose periplasmic binding protein (RbsB) JQ-EZ-05 chemical structure encoded by rbsB, a protein which is as abundant as or more abundant than flagellin. The ΔrbsB

mutant itself was found to be susceptible to H2O2, therefore could not be used to test the effect of RbsB on the H2O2 resistance of the arcA mutant E. coli (data not shown). Amino acid supplementation

improved the survival of the ΔarcA mutant E. coli under H2O2 stress We described above that a deletion of flagellin in E. coli improved the survival of the ΔarcA mutant E. oxyclozanide coli in the presence of H2O2. Our analysis of the proteome of the wild type and ΔarcA mutant E. coli indicated that levels of glutamine/aspartate periplasmic binding protein (GltI) and oligopeptide binding protein precursor (OppA) increased in the ΔarcA mutant as compared to the wild type E. coli (Table 2). In addition, the ΔarcA mutant E. coli failed to increase GltI and OppA protein levels in response to H2O2 as the wild type E. coli. This suggests that E. coli may have an increased need for amino acids under H2O2 stress and the ΔarcA mutant E. coli may benefit from amino acid supplementation. To test this hypothesis, we determined the effect of amino acid supplementation on the survival of the ΔarcA mutant E. coli in the presence of H2O2. To facilitate a direct comparison between the resistance of the wild type and ΔarcA mutant E. coli to H2O2 with or without amino acid supplementation, we carried out a disc diffusion assay, and bacterial resistance to H2O2 was measured by the diameter of the zone of inhibition (ZOI). Without amino acid supplementation the ZOI of the ΔarcA mutant E.