The plate was incubated at 20 °C for 1 h. Subsequently, the mixture was diluted five times with 10 mM Tris-HCl (pH 8.3) buffer. Preselective and selective PCR reactions were done with MspI A Flu-rare and MseI-TGAG as primers. One microliter of the diluted restriction-ligation mixture was used for amplification in a volume of 25 μL contained 2.5 μL of each primer, 0.2 μL Taq-polymerase, 1 μL DNA, 2 μL dNTP, 2.5 μL

Taq-buffer 10×, 14.3 μL aqua dest. Amplification was done as follows. After initial denaturation for 4 min at 94 °C in the first 20 cycles, a touchdown procedure was applied: 15 s of denaturation at 94 °C, 15 s of annealing at 66 °C, with the temperature ABT-199 in vitro for each successive cycle lowered by 0.5 °C, and 1 min of extension at 72 °C. Cycling was then continued for a further 30 cycles with an annealing temperature of 56 °C. After completion of the cycles, incubation at 72 °C for 10 min was performed before the reaction mixtures were cooled to room temperature. Samples were resolved by capillary electrophoresis in an ABI Prism 3130 genetic analyser (Applied Biosystems). Fluorescent dye FAM (6-carboxy fluorescein) and ROX were applied (Passive Reference Dye composed of a 25 μM solution of 5-carboxy-X-rhodamine

in 10mM Tris-HCl, pH 8.6, 0.1 mM EDTA, and 0.01% Tween-20). The amplicons were combined with the ET400-R size standard (GE Healthcare, Diegem, Belgium) and analysed on a Mega BACE 500 automated DNA platform (GE Healthcare) according to the manufacturer’s instructions. Data were inspected visually and were also imported in BioNumerics v. 4.61 software (Applied Maths, Sint-Martens-Latem, click here Belgium) and analysed by UPGMA clustering using the Pearson correlation coefficient. Inositol monophosphatase 1 The most variable locus sequenced in this study was RPB1 with 38 parsimony informative

sites on a length of 778 base pairs. The RPB1 locus unambiguously outperformed the ITS region with only 5 parsimony informative sites on a length of 577 base pairs. The ACT alignment contained 746 base pairs with 17 parsimony informative sites. The TEF alignment included 979 base pairs but only 4 were parsimony informative. The TEF sequences contained numerous polymorphisms exclusively in the third position of the triplet codon that are probably due to deviating copies of this gene. The polymorphic sites were excluded from the phylogenetic sequence analyses. The concatenated multi-locus alignment was composed of 3123 base pairs and contained 64 parsimony informative sites. Maximum parsimony analysis of the ITS locus resulted in 450 most parsimonious trees [tree length (TL) 9 steps]. In all four maximum likelihood (ML) trees based on the single loci ACT, ITS, RPB1, and TEF (data not shown) arrhizus and delemar formed two well-supported groups. There were no conflicts in gene genealogies of different loci. Given the similarities in topologies of single-locus trees, only the multi-locus tree based on a concatenated alignment of all four loci is depicted (Fig. 1).