haemolyticus strains, suggesting that duplicate lic1 loci in H. haemolyticus are rare or altogether absent (Table 2). Prevalence of the three LicD alleles in NT H. influenzae and H. haemolyticus Determining the prevalence of the three previously described licD alleles among the two species was initiated by PCR amplification and DNA sequence analysis of the licD genes from the 74 NT H. influenzae and 46 H. haemolyticus strains in our collection KU-60019 molecular weight that contained

a single lic1 locus. The deduced LicD amino-acid sequences of these strains were determined [GenBank:HM133649-HM133768] and the licD gene from one NT H. influenzae strain (Mr27) was repeatedly found to possess a nonsense mutation that would result in gene termination. A minimum-evolution dendrogram (in radiation view) was created from the remaining LicD amino-acid sequences of the NT H. influenzae and H. haemolyticus strains. The dendrogram revealed three distinct clusters, each containing a different H. influenzae prototype LicD allele (LicDI from strains Rd and 86-023NP, LicDIII

from strain E1a, and LicDIV PKA inhibitorinhibitor from strain R2866) (Figure 2). These results suggest that the three previously defined LicD alleles represent the major allelic variants found among the H. influenzae and H. haemolyticus species. Figure 2 Clustering of H. influenzae and H. haemolyticus LicD alleles. The major clusters of H. influenzae (blue dots) and H. haemolyticus (red dots) strains are labeled by their predicted allele (LicDI, LicDIII, and LicDIV) and prototype LicD alleles from H. influenzae strains are shown for each cluster (black dots, E1a is partially hidden).

The LicD protein of N. lactamica is the out-group for the analysis (green triangle). Next, we determined the population prevalence of specific licD alleles in our NT H. influenzae and H. haemolyticus strains. Among the 88 total NT H. influenzae strains in the collection, 43 (49%) NSC23766 clinical trial possessed a single licD I allele, 19 (22%) possessed a single licD III allele, and 25 (28%) possessed a single licD IV allele (Table 2). In contrast, only 1 of the 109 (0.9%) H. haemolyticus strains possessed a licD I allele while 23 (21%) possessed a single licD III allele and 23 (21%) possessed a single licD IV allele. Although the prevalence of single licD I alleles was statistically different Masitinib (AB1010) between NT H. influenzae and H. haemolyticus (P < .0001), the prevalence of the licD III and licD IV alleles was not statistically different between the species (Table 2). Assessment of licD gene alleles among the seven dual lic1 locus-containing NT H. influenzae strains was determined by PCR amplifying and sequencing licD from agarose gel slices of strain DNA digested with Mfe1. The results revealed that 4/88 (4.5%) strains had licD III -licD IV alleles, while only 1/88 (1.1%) strains each were found to possess combinations of licD I -licD III , licD I -licD IV , and licD I -licD I alleles (Table 2).